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Synchronize a source file/directory with a target file/directory

Source: R/RcppExports.R
vsi_sync.Rd

vsi_sync() is a wrapper for VSISync() in the GDAL Common Portability Library. The GDAL documentation is given in Details.

Usage

vsi_sync(src, target, show_progress = FALSE, options = NULL)

Arguments

src

Character string. Source file or directory.

target

Character string. Target file or directory.

show_progress

Logical scalar. If TRUE, a progress bar will be displayed. Defaults to FALSE.

options

Character vector of NAME=VALUE pairs (see Details).

Value

Logical scalar, TRUE on success or FALSE on an error.

Details

VSISync() is an analog of the Linux rsync utility. In the current implementation, rsync would be more efficient for local file copying, but VSISync() main interest is when the source or target is a remote file system like /vsis3/ or /vsigs/, in which case it can take into account the timestamps of the files (or optionally the ETag/MD5Sum) to avoid unneeded copy operations. This is only implemented efficiently for:

  • local filesystem <–> remote filesystem

  • remote filesystem <–> remote filesystem (starting with GDAL 3.1)
    Where the source and target remote filesystems are the same and one of /vsis3/, /vsigs/ or /vsiaz/. Or when the target is /vsiaz/ and the source is /vsis3/, /vsigs/, /vsiadls/ or /vsicurl/ (starting with GDAL 3.8)

Similarly to rsync behavior, if the source filename ends with a slash, it means that the content of the directory must be copied, but not the directory name. For example, assuming "/home/even/foo" contains a file "bar", VSISync("/home/even/foo/", "/mnt/media", ...) will create a "/mnt/media/bar" file. Whereas VSISync("/home/even/foo", "/mnt/media", ...) will create a "/mnt/media/foo" directory which contains a bar file.

The options argument accepts a character vector of name=value pairs. Currently accepted options are:

  • RECURSIVE=NO (the default is YES)

  • SYNC_STRATEGY=TIMESTAMP/ETAG/OVERWRITE. Determines which criterion is used to determine if a target file must be replaced when it already exists and has the same file size as the source. Only applies for a source or target being a network filesystem. The default is TIMESTAMP (similarly to how 'aws s3 sync' works), that is to say that for an upload operation, a remote file is replaced if it has a different size or if it is older than the source. For a download operation, a local file is replaced if it has a different size or if it is newer than the remote file. The ETAG strategy assumes that the ETag metadata of the remote file is the MD5Sum of the file content, which is only true in the case of /vsis3/ for files not using KMS server side encryption and uploaded in a single PUT operation (so smaller than 50 MB given the default used by GDAL). Only to be used for /vsis3/, /vsigs/ or other filesystems using a MD5Sum as ETAG. The OVERWRITE strategy (GDAL >= 3.2) will always overwrite the target file with the source one.

  • NUM_THREADS=integer. Number of threads to use for parallel file copying. Only use for when /vsis3/, /vsigs/, /vsiaz/ or /vsiadls/ is in source or target. The default is 10 since GDAL 3.3.

  • CHUNK_SIZE=integer. Maximum size of chunk (in bytes) to use to split large objects when downloading them from /vsis3/, /vsigs/, /vsiaz/ or /vsiadls/ to local file system, or for upload to /vsis3/, /vsiaz/ or /vsiadls/ from local file system. Only used if NUM_THREADS > 1. For upload to /vsis3/, this chunk size must be set at least to 5 MB. The default is 8 MB since GDAL 3.3.

  • x-amz-KEY=value. (GDAL >= 3.5) MIME header to pass during creation of a /vsis3/ object.

  • x-goog-KEY=value. (GDAL >= 3.5) MIME header to pass during creation of a /vsigs/ object.

  • x-ms-KEY=value. (GDAL >= 3.5) MIME header to pass during creation of a /vsiaz/ or /vsiadls/ object.

See also

copyDatasetFiles(), vsi_copy_file()

Examples

if (FALSE) { # \dontrun{
# sample-data is a directory in the git repository for gdalraster that is
# not included in the R package:
# https://github.com/USDAForestService/gdalraster/tree/main/sample-data
# A copy of sample-data in an AWS S3 bucket, and a partial copy in an
# Azure Blob container, were used to generate the example below.

src <- "/vsis3/gdalraster-sample-data/"
# s3://gdalraster-sample-data is not public, set credentials
set_config_option("AWS_ACCESS_KEY_ID", "xxxxxxxxxxxxxx")
set_config_option("AWS_SECRET_ACCESS_KEY", "xxxxxxxxxxxxxxxxxxxxxxxxxxxxx")
vsi_read_dir(src)
#> [1] "README.md"
#> [2] "bl_mrbl_ng_jul2004_rgb_720x360.tif"
#> [3] "blue_marble_ng_neo_metadata.xml"
#> [4] "landsat_c2ard_sr_mt_hood_jul2022_utm.json"
#> [5] "landsat_c2ard_sr_mt_hood_jul2022_utm.tif"
#> [6] "lf_elev_220_metadata.html"
#> [7] "lf_elev_220_mt_hood_utm.tif"
#> [8] "lf_fbfm40_220_metadata.html"
#> [9] "lf_fbfm40_220_mt_hood_utm.tif"

dst <- "/vsiaz/sampledata"
set_config_option("AZURE_STORAGE_CONNECTION_STRING",
                  "<connection_string_for_gdalraster_account>")
vsi_read_dir(dst)
#> [1] "lf_elev_220_metadata.html"   "lf_elev_220_mt_hood_utm.tif"

# GDAL VSISync() supports direct copy for /vsis3/ -> /vsiaz/ (GDAL >= 3.8)
result <- vsi_sync(src, dst, show_progress = TRUE)
#> 0...10...20...30...40...50...60...70...80...90...100 - done.
print(result)
#> [1] TRUE
vsi_read_dir(dst)
#> [1] "README.md"
#> [2] "bl_mrbl_ng_jul2004_rgb_720x360.tif"
#> [3] "blue_marble_ng_neo_metadata.xml"
#> [4] "landsat_c2ard_sr_mt_hood_jul2022_utm.json"
#> [5] "landsat_c2ard_sr_mt_hood_jul2022_utm.tif"
#> [6] "lf_elev_220_metadata.html"
#> [7] "lf_elev_220_mt_hood_utm.tif"
#> [8] "lf_fbfm40_220_metadata.html"
#> [9] "lf_fbfm40_220_mt_hood_utm.tif"
} # }