`CmbTable`

implements a hash table having a vector of integers as the key,
and the count of occurrences of each unique integer combination as the
value. A unique ID is assigned to each unique combination of input values.

## Value

An object of class `CmbTable`

. Contains a hash table having a
vector of `keyLen`

integers as the key and the count of occurrences of
each unique integer combination as the value, along with methods that
operate on the table as described in Details.
`CmbTable`

is a C++ class exposed directly to R (via `RCPP_EXPOSED_CLASS`

).
Methods of the class are accessed in R using the `$`

operator.

## Usage (see Details)

```
## Constructors
cmb <- new(CmbTable, keyLen)
# or, giving the variable names:
cmb <- new(CmbTable, keyLen, varNames)
## Methods
cmb$update(int_cmb, incr)
cmb$updateFromMatrix(int_cmbs, incr)
cmb$updateFromMatrixByRow(int_cmbs, incr)
cmb$asDataFrame()
cmb$asMatrix()
```

## Details

### Constructors

`new(CmbTable, keyLen)`

Default variable names will be assigned as `V1`

, `V2`

, ....
Returns an object of class `CmbTable`

.

`new(CmbTable, keyLen, varNames)`

Alternate constructor to specify variable names.
Returns an object of class `CmbTable`

.

### Methods

`$update(int_cmb, incr)`

Updates the hash table for the integer combination in the numeric vector
`int_cmb`

(coerced to integer by truncation).
If this combination exists in the table, its count will be
incremented by `incr`

. If the combination is not found in the table,
it will be inserted with count set to `incr`

.
Returns the unique ID assigned to this combination.
Combination IDs are sequential integers starting at `1`

.

`$updateFromMatrix(int_cmbs, incr)`

This method is the same as `$update()`

but for a numeric matrix of
integer combinations `int_cmbs`

(coerced to integer by truncation).
The matrix is arranged with each column vector forming an integer
combination. For example, the rows of the matrix could be
one row each from a set of `keyLen`

rasters all read at the
same extent and pixel resolution (i.e., row-by-row raster overlay).
The method calls `$update()`

on each combination (each column of
`int_cmbs`

), incrementing count by `incr`

for existing
combinations, or inserting new combinations with count set to `incr`

.
Returns a numeric vector of length `ncol(int_cmbs)`

containing the
IDs assigned to the combinations.

`$updateFromMatrixByRow(int_cmbs, incr)`

This method is the same as `$updateFromMatrix()`

above except the
integer combinations are in rows of the matrix `int_cmbs`

(columns
are the variables).
The method calls `$update()`

on each combination (each row of
`int_cmbs`

), incrementing count by `incr`

for existing
combinations, or inserting new combinations with count set to `incr`

.
Returns a numeric vector of length `nrow(int_cmbs)`

containing the
IDs assigned to the combinations.

`$asDataFrame()`

Returns the `CmbTable`

as a data frame with column `cmbid`

containing
the unique combination IDs, column `count`

containing the counts of
occurrences, and `keyLen`

columns (with names from `varNames`

) containing
the integer values comprising each unique combination.

`$asMatrix()`

Returns the `CmbTable`

as a matrix with column `1`

(`cmbid`

)
containing the unique combination IDs, column `2`

(`count`

)
containing the counts of occurrences, and columns `3:keyLen+2`

(with names from `varNames`

) containing the integer values comprising each
unique combination.

## Examples

```
m <- matrix(c(1,2,3,1,2,3,4,5,6,1,3,2,4,5,6,1,1,1), 3, 6, byrow=FALSE)
rownames(m) <- c("layer1", "layer2", "layer3")
print(m)
#> [,1] [,2] [,3] [,4] [,5] [,6]
#> layer1 1 1 4 1 4 1
#> layer2 2 2 5 3 5 1
#> layer3 3 3 6 2 6 1
cmb <- new(CmbTable, 3, rownames(m))
cmb$updateFromMatrix(m, 1)
#> [1] 1 1 2 3 2 4
cmb$asDataFrame()
#> cmbid count layer1 layer2 layer3
#> 1 4 1 1 1 1
#> 2 3 1 1 3 2
#> 3 2 2 4 5 6
#> 4 1 2 1 2 3
cmb$update(c(4,5,6), 1)
#> [1] 2
cmb$update(c(1,3,5), 1)
#> [1] 5
cmb$asDataFrame()
#> cmbid count layer1 layer2 layer3
#> 1 5 1 1 3 5
#> 2 4 1 1 1 1
#> 3 3 1 1 3 2
#> 4 2 3 4 5 6
#> 5 1 2 1 2 3
# same as above but matrix arranged with integer combinations in the rows
m <- matrix(c(1,2,3,1,2,3,4,5,6,1,3,2,4,5,6,1,1,1), 6, 3, byrow=TRUE)
colnames(m) <- c("V1", "V2", "V3")
print(m)
#> V1 V2 V3
#> [1,] 1 2 3
#> [2,] 1 2 3
#> [3,] 4 5 6
#> [4,] 1 3 2
#> [5,] 4 5 6
#> [6,] 1 1 1
cmb <- new(CmbTable, 3)
cmb$updateFromMatrixByRow(m, 1)
#> [1] 1 1 2 3 2 4
cmb$asDataFrame()
#> cmbid count V1 V2 V3
#> 1 4 1 1 1 1
#> 2 3 1 1 3 2
#> 3 2 2 4 5 6
#> 4 1 2 1 2 3
cmb$update(c(4,5,6), 1)
#> [1] 2
cmb$update(c(1,3,5), 1)
#> [1] 5
cmb$asDataFrame()
#> cmbid count V1 V2 V3
#> 1 5 1 1 3 5
#> 2 4 1 1 1 1
#> 3 3 1 1 3 2
#> 4 2 3 4 5 6
#> 5 1 2 1 2 3
```